SNP Detail For rs7588567
1.Mapping Information
Human SNP ID rs7588567
Human chromosome chr2
Human SNP position 133605461
Pig chromosome chr15
Pig SNP position 21074098
2.Annotation Information
PubMed ID22419738
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22419738
StudyA genome-wide association study in the Japanese population confirms 9p21 and 14q23 as susceptibility loci for primary open angle glaucoma.
Disease/TraitGlaucoma (primary open-angle)
Initial sample1,394 Japanese ancestry cases, 6,599 Japanese ancestry controls
Replication sample1,802 Japanese ancestry cases, 7,212 Japanese ancestry controls
Region2q21.2
Chromosome idchr2
Chromosome position133605461
Reported geneNCKAP5
Mapped geneNCKAP5
Upstream gene id
Downstream gene id
SNP gene ids344148
Upstream gene distance
Downstream gene distance
SNP risk allelers7588567-G
SNPsrs7588567
Merged0
SNP id current7588567
Contextintergenic_variant
Intergenic0
Allele frequency0.586
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta1.18
%95 Ci[1.10-1.25]
PlatformIllumina [602216]
CNVN
Mapped traitopen-angle glaucoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004190
Study accessionGCST001451