SNP Detail For rs7586898
1.Mapping Information
Human SNP ID rs7586898
Human chromosome chr2
Human SNP position 15821475
Pig chromosome chr3
Pig SNP position 129982573
2.Annotation Information
PubMed ID19896111
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19896111
StudyCommon variants in the trichohyalin gene are associated with straight hair in Europeans.
Disease/TraitHair morphology
Initial sample4,845 European ancestry individuals from 2,892 families, 16,140 European ancestry individuals
Replication sampleNA
Region2p24.3
Chromosome idchr2
Chromosome position15821475
Reported geneAC113608.1
Mapped geneLOC105373441 - RPLP1P5
Upstream gene id105373441
Downstream gene id130678
SNP gene ids
Upstream gene distance34900
Downstream gene distance48335
SNP risk allelers7586898-C
SNPsrs7586898
Merged0
SNP id current7586898
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta
%95 Ci
PlatformIllumina [~ 1000000] (imputed)
CNVN
Mapped traithair morphology
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005038
Study accessionGCST000519