Human SNP ID | rs758386 |
---|---|
Human chromosome | chr3 |
Human SNP position | 45775926 |
Pig chromosome | chr13 |
Pig SNP position | 32026699 |
PubMed ID | 22610502 |
---|---|
Journal | Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22610502 |
Study | Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients. |
Disease/Trait | Immune reponse to smallpox (secreted TNF-alpha) |
Initial sample | Up to 512 European ancestry individuals, up to 199 African American individuals |
Replication sample | NA |
Region | 3p21.31 |
Chromosome id | chr3 |
Chromosome position | 45775926 |
Reported gene | SLC6A20 |
Mapped gene | SLC6A20 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 54716 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs758386-A |
SNPs | rs758386 |
Merged | 0 |
SNP id current | 758386 |
Context | synonymous_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | (AA) |
Or beta | |
%95 Ci | |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | response to vaccine, cytokine measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004645, http://www.ebi.ac.uk/efo/EFO_0004873 |
Study accession | GCST001536 |