SNP Detail For rs758386
1.Mapping Information
Human SNP ID rs758386
Human chromosome chr3
Human SNP position 45775926
Pig chromosome chr13
Pig SNP position 32026699
2.Annotation Information
PubMed ID22610502
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22610502
StudyGenome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients.
Disease/TraitImmune reponse to smallpox (secreted TNF-alpha)
Initial sampleUp to 512 European ancestry individuals, up to 199 African American individuals
Replication sampleNA
Region3p21.31
Chromosome idchr3
Chromosome position45775926
Reported geneSLC6A20
Mapped geneSLC6A20
Upstream gene id
Downstream gene id
SNP gene ids54716
Upstream gene distance
Downstream gene distance
SNP risk allelers758386-A
SNPsrs758386
Merged0
SNP id current758386
Contextsynonymous_variant
Intergenic0
Allele frequency
P value0.0000002
Pvalue mlog6.69897000433601
P value text(AA)
Or beta
%95 Ci
PlatformIllumina [NR]
CNVN
Mapped traitresponse to vaccine, cytokine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004645, http://www.ebi.ac.uk/efo/EFO_0004873
Study accessionGCST001536