SNP Detail For rs7579944
1.Mapping Information
Human SNP ID rs7579944
Human chromosome chr2
Human SNP position 30222160
Pig chromosome chr3
Pig SNP position 115798286
2.Annotation Information
PubMed ID21383967
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21383967
StudyMeta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.
Disease/TraitCeliac disease or Rheumatoid arthritis
Initial sample4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls
Replication sample2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, 7,199 European ancestry controls
Region2p23.1
Chromosome idchr2
Chromosome position30222160
Reported geneLBH
Mapped geneLOC105374405 - LBH
Upstream gene id105374405
Downstream gene id81606
SNP gene ids
Upstream gene distance14430
Downstream gene distance9371
SNP risk allelers7579944-?
SNPsrs7579944
Merged0
SNP id current7579944
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.00000001
Pvalue mlog8
P value text
Or beta
%95 Ci
PlatformIllumina [472854]
CNVN
Mapped traitimmune system disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000540
Study accessionGCST000987