SNP Detail For rs7579899
1.Mapping Information
Human SNP ID rs7579899
Human chromosome chr2
Human SNP position 46310465
Pig chromosome chr3
Pig SNP position 100319188
2.Annotation Information
PubMed ID21131975
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21131975
StudyGenome-wide association study of renal cell carcinoma identifies two susceptibility loci on 2p21 and 11q13.3.
Disease/TraitRenal cell carcinoma
Initial sample3,772 European ancestry cases, 8,505 European ancestry controls
Replication sample2,198 European ancestry cases, 4,918 European ancestry controls
Region2p21
Chromosome idchr2
Chromosome position46310465
Reported geneEPAS1
Mapped geneLOC105374583, EPAS1
Upstream gene id
Downstream gene id
SNP gene ids105374583, 2034
Upstream gene distance
Downstream gene distance
SNP risk allelers7579899-?
SNPsrs7579899
Merged0
SNP id current7579899
Contextintron_variant
Intergenic0
Allele frequency0.4
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta1.15
%95 Ci[1.10-1.21]
PlatformIllumina [586069]
CNVN
Mapped traitrenal cell carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000681
Study accessionGCST000907