Human SNP ID | rs7579899 |
---|---|
Human chromosome | chr2 |
Human SNP position | 46310465 |
Pig chromosome | chr3 |
Pig SNP position | 100319188 |
PubMed ID | 21131975 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21131975 |
Study | Genome-wide association study of renal cell carcinoma identifies two susceptibility loci on 2p21 and 11q13.3. |
Disease/Trait | Renal cell carcinoma |
Initial sample | 3,772 European ancestry cases, 8,505 European ancestry controls |
Replication sample | 2,198 European ancestry cases, 4,918 European ancestry controls |
Region | 2p21 |
Chromosome id | chr2 |
Chromosome position | 46310465 |
Reported gene | EPAS1 |
Mapped gene | LOC105374583, EPAS1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105374583, 2034 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7579899-? |
SNPs | rs7579899 |
Merged | 0 |
SNP id current | 7579899 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.4 |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | |
Or beta | 1.15 |
%95 Ci | [1.10-1.21] |
Platform | Illumina [586069] |
CNV | N |
Mapped trait | renal cell carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000681 |
Study accession | GCST000907 |