SNP Detail For rs7578597
1.Mapping Information
Human SNP ID rs7578597
Human chromosome chr2
Human SNP position 43505684
Pig chromosome chr3
Pig SNP position 102966987
2.Annotation Information
PubMed ID18372903
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18372903
StudyMeta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes.
Disease/TraitType 2 diabetes
Initial sample4,549 European ancestry cases, 5,579 European ancestry controls
Replication sample24,194 European ancestry cases, 55,598 European ancestry controls
Region2p21
Chromosome idchr2
Chromosome position43505684
Reported geneTHADA
Mapped geneTHADA
Upstream gene id
Downstream gene id
SNP gene ids63892
Upstream gene distance
Downstream gene distance
SNP risk allelers7578597-T
SNPsrs7578597
Merged0
SNP id current7578597
Contextmissense_variant
Intergenic0
Allele frequency0.9
P value0.000000001
Pvalue mlog9
P value text
Or beta1.15
%95 Ci[1.10-1.20]
PlatformAffymetrix, Illumina [2202892] (imputed)
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST000167