SNP Detail For rs7578465
1.Mapping Information
Human SNP ID rs7578465
Human chromosome chr2
Human SNP position 29520867
Pig chromosome chr3
Pig SNP position 116625141
2.Annotation Information
PubMed ID25673413
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25673413
StudyGenetic studies of body mass index yield new insights for obesity biology.
Disease/TraitBody mass index
Initial sampleup to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals
Replication sampleup to 48,274 European ancestry male individuals, up to 39,864 European ancestry female individuals, 2,441 African American or Afro-Caribbean male individuals, 6,314 African American or Afro-Caribbean female individuals, 919 Filipino male individuals, 828
Region2p23.2
Chromosome idchr2
Chromosome position29520867
Reported geneALK
Mapped geneALK
Upstream gene id
Downstream gene id
SNP gene ids238
Upstream gene distance
Downstream gene distance
SNP risk allelers7578465-T
SNPsrs7578465
Merged0
SNP id current7578465
Contextintron_variant
Intergenic0
Allele frequency0.455
P value0.000008
Pvalue mlog5.09691001300805
P value text(EA, men)
Or beta0.023
%95 Ci[0.013-0.033] kg/m2 increase
PlatformAffymetrix, Illumina [2550021]
CNVN
Mapped traitbody mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST002783