Human SNP ID | rs7577894 |
---|---|
Human chromosome | chr2 |
Human SNP position | 55781769 |
Pig chromosome | chr3 |
Pig SNP position | 90246818 |
PubMed ID | 19451621 |
---|---|
Journal | Proc Natl Acad Sci U S A |
Link | www.ncbi.nlm.nih.gov/pubmed/19451621 |
Study | Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis. |
Disease/Trait | Amyotrophic lateral sclerosis |
Initial sample | 1,821 cases, 2,258 controls |
Replication sample | 538 cases, 556 controls |
Region | 2p16.1 |
Chromosome id | chr2 |
Chromosome position | 55781769 |
Reported gene | EFEMP1 |
Mapped gene | PNPT1 - LOC105374679 |
Upstream gene id | 87178 |
Downstream gene id | 105374679 |
SNP gene ids | |
Upstream gene distance | 87859 |
Downstream gene distance | 42389 |
SNP risk allele | rs7577894-T |
SNPs | rs7577894 |
Merged | 0 |
SNP id current | 7577894 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.39 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (site of onset) |
Or beta | 1.41 |
%95 Ci | [NR] |
Platform | Illumina [288357] |
CNV | N |
Mapped trait | amyotrophic lateral sclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000253 |
Study accession | GCST000406 |