Human SNP ID | rs757647 |
---|---|
Human chromosome | chr5 |
Human SNP position | 138371626 |
Pig chromosome | chr2 |
Pig SNP position | 146066839 |
PubMed ID | 21102462 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21102462 |
Study | Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies. |
Disease/Trait | Menarche (age at onset) |
Initial sample | 86,142 European ancestry female individuals, 557 Old Order Amish female individuals, 1,103 Erasmus Rucphen female individuals |
Replication sample | Up to 12,813 European ancestry female individuals, 910 Val Borbera female individuals, 348 Orcadian female individuals, 338 Friuli Venezia Giulia female individuals, 322 Carlantino female individuals |
Region | 5q31.2 |
Chromosome id | chr5 |
Chromosome position | 138371626 |
Reported gene | KDM3B |
Mapped gene | KDM3B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 51780 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs757647-A |
SNPs | rs757647 |
Merged | 0 |
SNP id current | 757647 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.22 |
P value | 0.00000005 |
Pvalue mlog | 7.30102999566398 |
P value text | |
Or beta | 2.4 |
%95 Ci | [1.62-3.18] week decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | age at menarche |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004703 |
Study accession | GCST000880 |