SNP Detail For rs757647
1.Mapping Information
Human SNP ID rs757647
Human chromosome chr5
Human SNP position 138371626
Pig chromosome chr2
Pig SNP position 146066839
2.Annotation Information
PubMed ID21102462
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21102462
StudyThirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.
Disease/TraitMenarche (age at onset)
Initial sample86,142 European ancestry female individuals, 557 Old Order Amish female individuals, 1,103 Erasmus Rucphen female individuals
Replication sampleUp to 12,813 European ancestry female individuals, 910 Val Borbera female individuals, 348 Orcadian female individuals, 338 Friuli Venezia Giulia female individuals, 322 Carlantino female individuals
Region5q31.2
Chromosome idchr5
Chromosome position138371626
Reported geneKDM3B
Mapped geneKDM3B
Upstream gene id
Downstream gene id
SNP gene ids51780
Upstream gene distance
Downstream gene distance
SNP risk allelers757647-A
SNPsrs757647
Merged0
SNP id current757647
Contextintron_variant
Intergenic0
Allele frequency0.22
P value0.00000005
Pvalue mlog7.30102999566398
P value text
Or beta2.4
%95 Ci[1.62-3.18] week decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST000880