SNP Detail For rs757608
1.Mapping Information
Human SNP ID rs757608
Human chromosome chr17
Human SNP position 61419916
Pig chromosome chr12
Pig SNP position 38314223
2.Annotation Information
PubMed ID18391951
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18391951
StudyMany sequence variants affecting diversity of adult human height.
Disease/TraitHeight
Initial sample30,968 European ancestry individuals
Replication sample8,541 European ancestry individuals
Region17q23.2
Chromosome idchr17
Chromosome position61419916
Reported geneBCAS3, TBX4, TBX2, NACA2
Mapped geneC17orf82 - TBX4
Upstream gene id388407
Downstream gene id9496
SNP gene ids
Upstream gene distance6636
Downstream gene distance24710
SNP risk allelers757608-T
SNPsrs757608
Merged0
SNP id current757608
Contextintergenic_variant
Intergenic1
Allele frequency0.35
P value0.00000006
Pvalue mlog7.22184874961635
P value text
Or beta4.4
%95 Ci[2.83-5.97] % s.d. increase
PlatformAffymetrix, Illumina [up to 304226]
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000175
PubMed ID25429064
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25429064
StudyMeta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.
Disease/TraitHeight
Initial sample36,227 East Asian ancestry individuals
Replication sample57,699 East Asian ancestry individuals
Region17q23.2
Chromosome idchr17
Chromosome position61419916
Reported geneTBX4
Mapped geneC17orf82 - TBX4
Upstream gene id388407
Downstream gene id9496
SNP gene ids
Upstream gene distance6636
Downstream gene distance24710
SNP risk allelers757608-A
SNPsrs757608
Merged0
SNP id current757608
Contextintergenic_variant
Intergenic1
Allele frequency0.29
P value0.00000000000000002
Pvalue mlog16.698970004336
P value text
Or beta0.042
%95 Ci[0.028-0.056] unit increase
PlatformAffymetrix, Illumina [2704730] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST002702