Human SNP ID | rs757608 |
---|---|
Human chromosome | chr17 |
Human SNP position | 61419916 |
Pig chromosome | chr12 |
Pig SNP position | 38314223 |
PubMed ID | 18391951 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18391951 |
Study | Many sequence variants affecting diversity of adult human height. |
Disease/Trait | Height |
Initial sample | 30,968 European ancestry individuals |
Replication sample | 8,541 European ancestry individuals |
Region | 17q23.2 |
Chromosome id | chr17 |
Chromosome position | 61419916 |
Reported gene | BCAS3, TBX4, TBX2, NACA2 |
Mapped gene | C17orf82 - TBX4 |
Upstream gene id | 388407 |
Downstream gene id | 9496 |
SNP gene ids | |
Upstream gene distance | 6636 |
Downstream gene distance | 24710 |
SNP risk allele | rs757608-T |
SNPs | rs757608 |
Merged | 0 |
SNP id current | 757608 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.35 |
P value | 0.00000006 |
Pvalue mlog | 7.22184874961635 |
P value text | |
Or beta | 4.4 |
%95 Ci | [2.83-5.97] % s.d. increase |
Platform | Affymetrix, Illumina [up to 304226] |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST000175 |
PubMed ID | 25429064 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25429064 |
Study | Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci. |
Disease/Trait | Height |
Initial sample | 36,227 East Asian ancestry individuals |
Replication sample | 57,699 East Asian ancestry individuals |
Region | 17q23.2 |
Chromosome id | chr17 |
Chromosome position | 61419916 |
Reported gene | TBX4 |
Mapped gene | C17orf82 - TBX4 |
Upstream gene id | 388407 |
Downstream gene id | 9496 |
SNP gene ids | |
Upstream gene distance | 6636 |
Downstream gene distance | 24710 |
SNP risk allele | rs757608-A |
SNPs | rs757608 |
Merged | 0 |
SNP id current | 757608 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.29 |
P value | 0.00000000000000002 |
Pvalue mlog | 16.698970004336 |
P value text | |
Or beta | 0.042 |
%95 Ci | [0.028-0.056] unit increase |
Platform | Affymetrix, Illumina [2704730] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST002702 |