SNP Detail For rs7572733
1.Mapping Information
Human SNP ID rs7572733
Human chromosome chr2
Human SNP position 198065082
Pig chromosome chr15
Pig SNP position 112921852
2.Annotation Information
PubMed ID23983088
JournalArthritis Rheum
Linkwww.ncbi.nlm.nih.gov/pubmed/23983088
StudyGenome-wide association study of dermatomyositis reveals genetic overlap with other autoimmune disorders.
Disease/TraitDermatomyositis
Initial sample1,178 European ancestry cases, 4,724 European ancestry controls
Replication sampleNA
Region2q33.1
Chromosome idchr2
Chromosome position198065082
Reported genePLCL1
Mapped genePLCL1
Upstream gene id
Downstream gene id
SNP gene ids5334
Upstream gene distance
Downstream gene distance
SNP risk allelers7572733-?
SNPsrs7572733
Merged0
SNP id current7572733
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.25
%95 Ci[1.14-1.39]
PlatformIllumina [up to 242876]
CNVN
Mapped traitdermatomyositis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000398
Study accessionGCST002151