Human SNP ID | rs7572733 |
---|---|
Human chromosome | chr2 |
Human SNP position | 198065082 |
Pig chromosome | chr15 |
Pig SNP position | 112921852 |
PubMed ID | 23983088 |
---|---|
Journal | Arthritis Rheum |
Link | www.ncbi.nlm.nih.gov/pubmed/23983088 |
Study | Genome-wide association study of dermatomyositis reveals genetic overlap with other autoimmune disorders. |
Disease/Trait | Dermatomyositis |
Initial sample | 1,178 European ancestry cases, 4,724 European ancestry controls |
Replication sample | NA |
Region | 2q33.1 |
Chromosome id | chr2 |
Chromosome position | 198065082 |
Reported gene | PLCL1 |
Mapped gene | PLCL1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5334 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7572733-? |
SNPs | rs7572733 |
Merged | 0 |
SNP id current | 7572733 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 1.25 |
%95 Ci | [1.14-1.39] |
Platform | Illumina [up to 242876] |
CNV | N |
Mapped trait | dermatomyositis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000398 |
Study accession | GCST002151 |