Human SNP ID | rs7569328 |
---|---|
Human chromosome | chr2 |
Human SNP position | 20901018 |
Pig chromosome | chr3 |
Pig SNP position | 125317077 |
PubMed ID | 21347282 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21347282 |
Study | Genome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project. |
Disease/Trait | LDL cholesterol |
Initial sample | 7,565 African American individuals |
Replication sample | 3,789 African American and Afro-Caribbean individuals |
Region | 2p24.1 |
Chromosome id | chr2 |
Chromosome position | 20901018 |
Reported gene | intergenic |
Mapped gene | LOC101928271 - APOB |
Upstream gene id | 101928271 |
Downstream gene id | 338 |
SNP gene ids | |
Upstream gene distance | 39357 |
Downstream gene distance | 98200 |
SNP risk allele | rs7569328-T |
SNPs | rs7569328 |
Merged | 0 |
SNP id current | 7569328 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.15 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 0.0995 |
%95 Ci | [0.063-0.136] unit decrease |
Platform | Affymetrix [~ 2740000] (imputed) |
CNV | N |
Mapped trait | low density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004611 |
Study accession | GCST000975 |