SNP Detail For rs7569328
1.Mapping Information
Human SNP ID rs7569328
Human chromosome chr2
Human SNP position 20901018
Pig chromosome chr3
Pig SNP position 125317077
2.Annotation Information
PubMed ID21347282
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21347282
StudyGenome-wide association study of coronary heart disease and its risk factors in 8,090 African Americans: the NHLBI CARe Project.
Disease/TraitLDL cholesterol
Initial sample7,565 African American individuals
Replication sample3,789 African American and Afro-Caribbean individuals
Region2p24.1
Chromosome idchr2
Chromosome position20901018
Reported geneintergenic
Mapped geneLOC101928271 - APOB
Upstream gene id101928271
Downstream gene id338
SNP gene ids
Upstream gene distance39357
Downstream gene distance98200
SNP risk allelers7569328-T
SNPsrs7569328
Merged0
SNP id current7569328
Contextintergenic_variant
Intergenic1
Allele frequency0.15
P value0.0000001
Pvalue mlog7
P value text
Or beta0.0995
%95 Ci[0.063-0.136] unit decrease
PlatformAffymetrix [~ 2740000] (imputed)
CNVN
Mapped traitlow density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004611
Study accessionGCST000975