SNP Detail For rs7568498
1.Mapping Information
Human SNP ID rs7568498
Human chromosome chr2
Human SNP position 161172602
Pig chromosome chr15
Pig SNP position 75466192
2.Annotation Information
PubMed ID24554482
JournalJ Neurovirol
Linkwww.ncbi.nlm.nih.gov/pubmed/24554482
StudyGenome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384.
Disease/TraitResponse to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 3 peripheral neuropathy)
Initial sample8 European ancestry cases, 12 African American cases, 3 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls
Replication sampleNA
Region2q24.2
Chromosome idchr2
Chromosome position161172602
Reported geneTANK
Mapped geneTANK
Upstream gene id
Downstream gene id
SNP gene ids10010
Upstream gene distance
Downstream gene distance
SNP risk allelers7568498-?
SNPsrs7568498
Merged0
SNP id current7568498
Contextintron_variant
Intergenic0
Allele frequency
P value0.00000002
Pvalue mlog7.69897000433601
P value text(Hispanic)
Or beta
%95 Ci[NR]
PlatformIllumina [936149]
CNVN
Mapped traitresponse to reverse transcriptase inhibitor, HIV-1 infection, peripheral neuropathy
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0061479, http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0003100
Study accessionGCST002363