SNP Detail For rs7566684
1.Mapping Information
Human SNP ID rs7566684
Human chromosome chr2
Human SNP position 157491960
Pig chromosome chr15
Pig SNP position 71350826
2.Annotation Information
PubMed ID25646338
JournalAm J Clin Nutr
Linkwww.ncbi.nlm.nih.gov/pubmed/25646338
StudyGenetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitTrans fatty acid levels
Initial sample8,013 European ancestry individuals
Replication sample1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals
Region2q24.1
Chromosome idchr2
Chromosome position157491960
Reported geneNR
Mapped geneLOC105373712 - ACVR1C
Upstream gene id105373712
Downstream gene id130399
SNP gene ids
Upstream gene distance880
Downstream gene distance34807
SNP risk allelers7566684-A
SNPsrs7566684
Merged0
SNP id current7566684
Contextupstream_gene_variant
Intergenic1
Allele frequency0.981
P value0.0000008
Pvalue mlog6.09691001300805
P value text(Trans/trans-18:2, EA)
Or beta0.0082
%95 Ci[0.0049-0.0115] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traittrans fatty acid measurement, trans/trans-18:2 fatty acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006821, http://www.ebi.ac.uk/efo/EFO_0006826
Study accessionGCST002721