Human SNP ID | rs7566684 |
---|---|
Human chromosome | chr2 |
Human SNP position | 157491960 |
Pig chromosome | chr15 |
Pig SNP position | 71350826 |
PubMed ID | 25646338 |
---|---|
Journal | Am J Clin Nutr |
Link | www.ncbi.nlm.nih.gov/pubmed/25646338 |
Study | Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. |
Disease/Trait | Trans fatty acid levels |
Initial sample | 8,013 European ancestry individuals |
Replication sample | 1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals |
Region | 2q24.1 |
Chromosome id | chr2 |
Chromosome position | 157491960 |
Reported gene | NR |
Mapped gene | LOC105373712 - ACVR1C |
Upstream gene id | 105373712 |
Downstream gene id | 130399 |
SNP gene ids | |
Upstream gene distance | 880 |
Downstream gene distance | 34807 |
SNP risk allele | rs7566684-A |
SNPs | rs7566684 |
Merged | 0 |
SNP id current | 7566684 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.981 |
P value | 0.0000008 |
Pvalue mlog | 6.09691001300805 |
P value text | (Trans/trans-18:2, EA) |
Or beta | 0.0082 |
%95 Ci | [0.0049-0.0115] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | trans fatty acid measurement, trans/trans-18:2 fatty acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006821, http://www.ebi.ac.uk/efo/EFO_0006826 |
Study accession | GCST002721 |