SNP Detail For rs7561966
1.Mapping Information
Human SNP ID rs7561966
Human chromosome chr2
Human SNP position 128746777
Pig chromosome chr15
Pig SNP position 64945153
2.Annotation Information
PubMed ID23362303
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23362303
StudyGenome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortiu
Disease/TraitPalmitic acid (16:0) plasma levels
Initial sample8,961 European ancestry individuals
Replication sample
Region2q14.3
Chromosome idchr2
Chromosome position128746777
Reported geneHS6ST1
Mapped geneLOC105373611 - LOC101927881
Upstream gene id105373611
Downstream gene id101927881
SNP gene ids
Upstream gene distance102547
Downstream gene distance117823
SNP risk allelers7561966-A
SNPsrs7561966
Merged0
SNP id current7561966
Contextregulatory_region_variant
Intergenic1
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta0.6809
%95 Ciunit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitphospholipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004639
Study accessionGCST001838