Human SNP ID | rs7561966 |
---|---|
Human chromosome | chr2 |
Human SNP position | 128746777 |
Pig chromosome | chr15 |
Pig SNP position | 64945153 |
PubMed ID | 23362303 |
---|---|
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23362303 |
Study | Genome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortiu |
Disease/Trait | Palmitic acid (16:0) plasma levels |
Initial sample | 8,961 European ancestry individuals |
Replication sample | |
Region | 2q14.3 |
Chromosome id | chr2 |
Chromosome position | 128746777 |
Reported gene | HS6ST1 |
Mapped gene | LOC105373611 - LOC101927881 |
Upstream gene id | 105373611 |
Downstream gene id | 101927881 |
SNP gene ids | |
Upstream gene distance | 102547 |
Downstream gene distance | 117823 |
SNP risk allele | rs7561966-A |
SNPs | rs7561966 |
Merged | 0 |
SNP id current | 7561966 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 0.6809 |
%95 Ci | unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | phospholipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004639 |
Study accession | GCST001838 |