Human SNP ID | rs7554182 |
---|---|
Human chromosome | chr1 |
Human SNP position | 182052148 |
Pig chromosome | chr9 |
Pig SNP position | 135663200 |
PubMed ID | 24554482 |
---|---|
Journal | J Neurovirol |
Link | www.ncbi.nlm.nih.gov/pubmed/24554482 |
Study | Genome-wide association study of peripheral neuropathy with D-drug-containing regimens in AIDS Clinical Trials Group protocol 384. |
Disease/Trait | Response to anti-retroviral therapy (ddI/d4T) in HIV-1 infection (Grade 3 peripheral neuropathy) |
Initial sample | 8 European ancestry cases, 12 African American cases, 3 Hispanic cases, 85 European ancestry controls, 49 African American controls, 30 Hispanic controls |
Replication sample | NA |
Region | 1q25.3 |
Chromosome id | chr1 |
Chromosome position | 182052148 |
Reported gene | ZNF648 |
Mapped gene | LOC105371640 - ZNF648 |
Upstream gene id | 105371640 |
Downstream gene id | 127665 |
SNP gene ids | |
Upstream gene distance | 47818 |
Downstream gene distance | 1618 |
SNP risk allele | rs7554182-? |
SNPs | rs7554182 |
Merged | 0 |
SNP id current | 7554182 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.00000006 |
Pvalue mlog | 7.22184874961635 |
P value text | (AA) |
Or beta | 48.5 |
%95 Ci | [NR] |
Platform | Illumina [936149] |
CNV | N |
Mapped trait | response to reverse transcriptase inhibitor, HIV-1 infection, peripheral neuropathy |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0061479, http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0003100 |
Study accession | GCST002363 |