Human SNP ID | rs7551188 |
---|---|
Human chromosome | chr1 |
Human SNP position | 24946709 |
Pig chromosome | chr6 |
Pig SNP position | 76318489 |
PubMed ID | 23266558 |
---|---|
Journal | Gastroenterology |
Link | www.ncbi.nlm.nih.gov/pubmed/23266558 |
Study | A genome-wide association study identifies 2 susceptibility Loci for Crohn__s disease in a Japanese population. |
Disease/Trait | Crohn__s disease |
Initial sample | 372 Japanese ancestry cases,3,389 Japanese ancestry controls |
Replication sample | Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls |
Region | 1p36.11 |
Chromosome id | chr1 |
Chromosome position | 24946709 |
Reported gene | RUNX3 |
Mapped gene | LOC105376878, RUNX3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105376878, 864 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7551188-T |
SNPs | rs7551188 |
Merged | 0 |
SNP id current | 7551188 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | 1.18 |
%95 Ci | [1.10-1.28] |
Platform | Illumina [4929034] (imputed) |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST001785 |