SNP Detail For rs7551188
1.Mapping Information
Human SNP ID rs7551188
Human chromosome chr1
Human SNP position 24946709
Pig chromosome chr6
Pig SNP position 76318489
2.Annotation Information
PubMed ID23266558
JournalGastroenterology
Linkwww.ncbi.nlm.nih.gov/pubmed/23266558
StudyA genome-wide association study identifies 2 susceptibility Loci for Crohn__s disease in a Japanese population.
Disease/TraitCrohn__s disease
Initial sample372 Japanese ancestry cases,3,389 Japanese ancestry controls
Replication sampleUp to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls
Region1p36.11
Chromosome idchr1
Chromosome position24946709
Reported geneRUNX3
Mapped geneLOC105376878, RUNX3
Upstream gene id
Downstream gene id
SNP gene ids105376878, 864
Upstream gene distance
Downstream gene distance
SNP risk allelers7551188-T
SNPsrs7551188
Merged0
SNP id current7551188
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta1.18
%95 Ci[1.10-1.28]
PlatformIllumina [4929034] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST001785