SNP Detail For rs75430906
1.Mapping Information
Human SNP ID rs75430906
Human chromosome chr3
Human SNP position 20676437
Pig chromosome chr13
Pig SNP position 8504277
2.Annotation Information
PubMed ID24927181
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/24927181
StudyGenome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.
Disease/TraitAcne (severe)
Initial sample1,893 European ancestry cases, 5,132 European ancestry controls
Replication sample2,063 European ancestry cases, 1,970 European ancestry controls
Region3p24.3
Chromosome idchr3
Chromosome position20676437
Reported geneSGOL1
Mapped geneLOC101927829 - LOC105376987
Upstream gene id101927829
Downstream gene id105376987
SNP gene ids
Upstream gene distance325509
Downstream gene distance364793
SNP risk allelers75430906-A
SNPsrs75430906
Merged0
SNP id current75430906
Contextintron_variant
Intergenic1
Allele frequency0.001
P value0.0000001
Pvalue mlog7
P value text
Or beta3.46
%95 Ci[1.51-7.96]
PlatformIllumina [7300000] (imputed)
CNVN
Mapped traitacne
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003894
Study accessionGCST002481