Human SNP ID | rs75430906 |
---|---|
Human chromosome | chr3 |
Human SNP position | 20676437 |
Pig chromosome | chr13 |
Pig SNP position | 8504277 |
PubMed ID | 24927181 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/24927181 |
Study | Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. |
Disease/Trait | Acne (severe) |
Initial sample | 1,893 European ancestry cases, 5,132 European ancestry controls |
Replication sample | 2,063 European ancestry cases, 1,970 European ancestry controls |
Region | 3p24.3 |
Chromosome id | chr3 |
Chromosome position | 20676437 |
Reported gene | SGOL1 |
Mapped gene | LOC101927829 - LOC105376987 |
Upstream gene id | 101927829 |
Downstream gene id | 105376987 |
SNP gene ids | |
Upstream gene distance | 325509 |
Downstream gene distance | 364793 |
SNP risk allele | rs75430906-A |
SNPs | rs75430906 |
Merged | 0 |
SNP id current | 75430906 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.001 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 3.46 |
%95 Ci | [1.51-7.96] |
Platform | Illumina [7300000] (imputed) |
CNV | N |
Mapped trait | acne |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003894 |
Study accession | GCST002481 |