Human SNP ID | rs7542813 |
---|---|
Human chromosome | chr1 |
Human SNP position | 244970237 |
Pig chromosome | chr10 |
Pig SNP position | 20041311 |
PubMed ID | 26634245 |
---|---|
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Post bronchodilator FEV1 in COPD |
Initial sample | 5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases |
Replication sample | NA |
Region | 1q44 |
Chromosome id | chr1 |
Chromosome position | 244970237 |
Reported gene | EFCAB2 |
Mapped gene | LOC101928068, EFCAB2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928068, 84288 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7542813-A |
SNPs | rs7542813 |
Merged | 0 |
SNP id current | 7542813 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.993 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (AA) |
Or beta | 0.971 |
%95 Ci | NR unit increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | forced expiratory volume, response to bronchodilator, chronic obstructive pulmonary disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341 |
Study accession | GCST003263 |