SNP Detail For rs7542813
1.Mapping Information
Human SNP ID rs7542813
Human chromosome chr1
Human SNP position 244970237
Pig chromosome chr10
Pig SNP position 20041311
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1 in COPD
Initial sample5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases
Replication sampleNA
Region1q44
Chromosome idchr1
Chromosome position244970237
Reported geneEFCAB2
Mapped geneLOC101928068, EFCAB2
Upstream gene id
Downstream gene id
SNP gene ids101928068, 84288
Upstream gene distance
Downstream gene distance
SNP risk allelers7542813-A
SNPsrs7542813
Merged0
SNP id current7542813
Contextmissense_variant
Intergenic0
Allele frequency0.993
P value0.000002
Pvalue mlog5.69897000433601
P value text(AA)
Or beta0.971
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitforced expiratory volume, response to bronchodilator, chronic obstructive pulmonary disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341
Study accessionGCST003263