SNP Detail For rs7539409
1.Mapping Information
Human SNP ID rs7539409
Human chromosome chr1
Human SNP position 83789052
Pig chromosome chr6
Pig SNP position 120358547
2.Annotation Information
PubMed ID20061627
JournalJ Alzheimers Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/20061627
StudyGenome-wide scan of copy number variation in late-onset Alzheimer__s disease.
Disease/TraitAlzheimer__s disease
Initial sample331 European ancestry cases, 368 European ancestry controls
Replication sampleNA
Region1p31.1
Chromosome idchr1
Chromosome position83789052
Reported geneTTLL7
Mapped geneLOC101927587
Upstream gene id
Downstream gene id
SNP gene ids101927587
Upstream gene distance
Downstream gene distance
SNP risk allelers7539409-?
SNPsrs7539409
Merged0
SNP id current7539409
Contextintron_variant
Intergenic0
Allele frequency0.18
P value0.000001
Pvalue mlog6
P value text
Or beta
%95 Ci
PlatformIllumina [~ 550000]
CNVN
Mapped traitAlzheimers disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000249
Study accessionGCST000484