Human SNP ID | rs7536700 |
---|---|
Human chromosome | chr1 |
Human SNP position | 153668351 |
Pig chromosome | chr4 |
Pig SNP position | 104875818 |
PubMed ID | 23502783 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23502783 |
Study | The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma. |
Disease/Trait | Multiple myeloma (IgH translocation) |
Initial sample | up to 1,660 European ancestry cases, 7,306 European ancestry controls |
Replication sample | |
Region | 1q21.3 |
Chromosome id | chr1 |
Chromosome position | 153668351 |
Reported gene | NR |
Mapped gene | ILF2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3608 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7536700-A |
SNPs | rs7536700 |
Merged | 0 |
SNP id current | 7536700 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.07 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (Any IgH translocation vs. controls) |
Or beta | 1.53 |
%95 Ci | [1.28-1.84] |
Platform | Illumina [414804] (imputed) |
CNV | N |
Mapped trait | multiple myeloma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001378 |
Study accession | GCST001906 |
PubMed ID | 23502783 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23502783 |
Study | The CCND1 c.870G>A polymorphism is a risk factor for t(11;14)(q13;q32) multiple myeloma. |
Disease/Trait | Multiple myeloma (IgH translocation) |
Initial sample | up to 1,660 European ancestry cases, 7,306 European ancestry controls |
Replication sample | |
Region | 1q21.3 |
Chromosome id | chr1 |
Chromosome position | 153668351 |
Reported gene | NR |
Mapped gene | ILF2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3608 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7536700-A |
SNPs | rs7536700 |
Merged | 0 |
SNP id current | 7536700 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.07 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (non t11;14 and t4;14 IgH translocations vs. controls) |
Or beta | 1.86 |
%95 Ci | [1.42-2.46] |
Platform | Illumina [414804] (imputed) |
CNV | N |
Mapped trait | multiple myeloma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001378 |
Study accession | GCST001906 |