SNP Detail For rs7535752
1.Mapping Information
Human SNP ID rs7535752
Human chromosome chr1
Human SNP position 8335500
Pig chromosome chr6
Pig SNP position 63405211
2.Annotation Information
PubMed ID23468962
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23468962
StudyA genome-wide scan for breast cancer risk haplotypes among African American women.
Disease/TraitBreast cancer
Initial sample3,016 African American cases, 2,745 African American controls
Replication sampleNA
Region1p36.23
Chromosome idchr1;1
Chromosome position8326670;8335500
Reported gene
Mapped geneSLC45A1; SLC45A1
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers9628987-?; rs7535752-?
SNPsrs9628987; rs7535752
Merged0
SNP id current
Contextintron_variant; missense_variant
Intergenic
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta
%95 Ci
PlatformIllumina [1006480]
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001879
PubMed ID23468962
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23468962
StudyA genome-wide scan for breast cancer risk haplotypes among African American women.
Disease/TraitBreast cancer
Initial sample3,016 African American cases, 2,745 African American controls
Replication sampleNA
Region1p36.23
Chromosome idchr1;1;1;1;1
Chromosome position8335381;8335500;8326670;8334176;8330828
Reported geneSLC45A1
Mapped geneSLC45A1; SLC45A1; SLC45A1; SLC45A1; SLC45A1
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers2305016-?; rs7535752-?; rs9628987-?; rs12711517-?; rs2289731-?
SNPsrs2305016; rs7535752; rs9628987; rs12711517; rs2289731
Merged0
SNP id current
Contextintron_variant; missense_variant; intron_variant; intron_variant; synonymous_variant
Intergenic
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta1.23
%95 Ci[1.12-1.35]
PlatformIllumina [1006480]
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001879