SNP Detail For rs7534537
1.Mapping Information
Human SNP ID rs7534537
Human chromosome chr1
Human SNP position 204305391
Pig chromosome chr9
Pig SNP position 71280250
2.Annotation Information
PubMed ID23362303
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23362303
StudyGenome-wide association study identifies novel loci associated with concentrations of four plasma phospholipid fatty acids in the de novo lipogenesis pathway: results from the Cohorts for Heart and Aging Research in Genomic Epidemiology (CHARGE) consortiu
Disease/TraitPalmitoleic acid (16:1n-7) plasma levels
Initial sample8,961 European ancestry individuals
Replication sample
Region1q32.1
Chromosome idchr1
Chromosome position204305391
Reported genePLEKHA6
Mapped genePLEKHA6
Upstream gene id
Downstream gene id
SNP gene ids22874
Upstream gene distance
Downstream gene distance
SNP risk allelers7534537-T
SNPsrs7534537
Merged0
SNP id current7534537
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta0.0587
%95 Ciunit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitphospholipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004639
Study accessionGCST001841