SNP Detail For rs7527939
1.Mapping Information
Human SNP ID rs7527939
Human chromosome chr1
Human SNP position 210362681
Pig chromosome chr9
Pig SNP position 145668160
2.Annotation Information
PubMed ID23142968
JournalPsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23142968
StudyWhole-genome-wide association study in the Bulgarian population reveals HHAT as schizophrenia susceptibility gene.
Disease/TraitSchizophrenia
Initial sample188 European ancestry cases, 376 European ancestry controls
Replication sample99 European ancestry cases, 328 European ancestry controls
Region1q32.2
Chromosome idchr1
Chromosome position210362681
Reported geneHHAT
Mapped geneHHAT
Upstream gene id
Downstream gene id
SNP gene ids55733
Upstream gene distance
Downstream gene distance
SNP risk allelers7527939-C
SNPsrs7527939
Merged0
SNP id current7527939
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000000006
Pvalue mlog8.22184874961635
P value text
Or beta2.63
%95 Ci[1.89-3.66]
PlatformIllumina [495089]
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST001733