Human SNP ID | rs7527939 |
---|---|
Human chromosome | chr1 |
Human SNP position | 210362681 |
Pig chromosome | chr9 |
Pig SNP position | 145668160 |
PubMed ID | 23142968 |
---|---|
Journal | Psychiatr Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23142968 |
Study | Whole-genome-wide association study in the Bulgarian population reveals HHAT as schizophrenia susceptibility gene. |
Disease/Trait | Schizophrenia |
Initial sample | 188 European ancestry cases, 376 European ancestry controls |
Replication sample | 99 European ancestry cases, 328 European ancestry controls |
Region | 1q32.2 |
Chromosome id | chr1 |
Chromosome position | 210362681 |
Reported gene | HHAT |
Mapped gene | HHAT |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 55733 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7527939-C |
SNPs | rs7527939 |
Merged | 0 |
SNP id current | 7527939 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000006 |
Pvalue mlog | 8.22184874961635 |
P value text | |
Or beta | 2.63 |
%95 Ci | [1.89-3.66] |
Platform | Illumina [495089] |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST001733 |