SNP Detail For rs75260059
1.Mapping Information
Human SNP ID rs75260059
Human chromosome chr2
Human SNP position 199751534
Pig chromosome JH118883-1
Pig SNP position 69770
2.Annotation Information
PubMed ID25760438
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25760438
StudyFirst genome-wide association study in an Australian aboriginal population provides insights into genetic risk factors for body mass index and type 2 diabetes.
Disease/TraitType 2 diabetes
Initial sample89 Martu Australian Aboriginal ancestry cases, 302 Martu Australian Aboriginal ancestry controls
Replication sampleNA
Region2q33.1
Chromosome idchr2
Chromosome position199751534
Reported geneTYW5, SATB2
Mapped geneLOC101927641 - FTCDNL1
Upstream gene id101927641
Downstream gene id348751
SNP gene ids
Upstream gene distance92402
Downstream gene distance9002
SNP risk allelers75260059-?
SNPsrs75260059
Merged0
SNP id current75260059
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000009
Pvalue mlog6.04575749056067
P value text
Or beta0.34
%95 Ci[0.20-0.48] unit increase
PlatformIllumina [1075436] (imputed)
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST002806