SNP Detail For rs7523455
1.Mapping Information
Human SNP ID rs7523455
Human chromosome chr1
Human SNP position 19005582
Pig chromosome chr6
Pig SNP position 71678923
2.Annotation Information
PubMed ID19901119
JournalJ Clin Oncol
Linkwww.ncbi.nlm.nih.gov/pubmed/19901119
StudyGermline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.
Disease/TraitMethotrexate phramacokinetics (acute lymphoblastic leukemia)
Initial sample315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases
Replication sampleNA
Region1p36.13
Chromosome idchr1
Chromosome position19005582
Reported geneintergenic
Mapped geneLOC105376815
Upstream gene id
Downstream gene id
SNP gene ids105376815
Upstream gene distance
Downstream gene distance
SNP risk allelers7523455-A
SNPsrs7523455
Merged0
SNP id current7523455
Contextintergenic_variant
Intergenic0
Allele frequency0.19
P value0.0000002
Pvalue mlog6.69897000433601
P value text
Or beta
%95 Ci[NR]
PlatformAffymetrix [398699]
CNVN
Mapped traitresponse to antineoplastic agent
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097327
Study accessionGCST000523