SNP Detail For rs751728
1.Mapping Information
Human SNP ID rs751728
Human chromosome chr6
Human SNP position 33796256
Pig chromosome chr7
Pig SNP position 34664568
2.Annotation Information
PubMed ID23850713
JournalGut
Linkwww.ncbi.nlm.nih.gov/pubmed/23850713
StudyGenome-wide association study of Crohn__s disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations.
Disease/TraitCrohn__s disease
Initial sample532 Korean ancestry cases, 733 Korean ancestry controls
Replication sample1,779 Korean ancestry cases, 1,709 Korean ancestry controls
Region6p21.31
Chromosome idchr6
Chromosome position33796256
Reported geneLEMD2, MLN, ITPR3, MIF1, IP6K3
Mapped geneLOC105375024, MLN
Upstream gene id
Downstream gene id
SNP gene ids105375024, 4295
Upstream gene distance
Downstream gene distance
SNP risk allelers751728-T
SNPsrs751728
Merged0
SNP id current751728
Contextintron_variant
Intergenic0
Allele frequency0.733
P value0.00000001
Pvalue mlog8
P value text
Or beta1.32
%95 Ci[1.20-1.45]
PlatformIllumina [5664371] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST002094