Human SNP ID | rs7512552 |
---|---|
Human chromosome | chr1 |
Human SNP position | 150293284 |
Pig chromosome | chr4 |
Pig SNP position | 108083180 |
PubMed ID | 26482879 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26482879 |
Study | Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis. |
Disease/Trait | Atopic dermatitis |
Initial sample | 18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls |
Replication sample | 30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls |
Region | 1q21.2 |
Chromosome id | chr1 |
Chromosome position | 150293284 |
Reported gene | C1orf51, MRPS21 |
Mapped gene | CIART - LOC105371434 |
Upstream gene id | 148523 |
Downstream gene id | 105371434 |
SNP gene ids | |
Upstream gene distance | 6191 |
Downstream gene distance | 18 |
SNP risk allele | rs7512552-C |
SNPs | rs7512552 |
Merged | 0 |
SNP id current | 7512552 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.51 |
P value | 0.000000005 |
Pvalue mlog | 8.30102999566398 |
P value text | (EA, fixed effects) |
Or beta | 1.0416667 |
%95 Ci | |
Platform | Illumina [15539996] (imputed) |
CNV | N |
Mapped trait | atopic eczema |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000274 |
Study accession | GCST003184 |
PubMed ID | 26482879 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26482879 |
Study | Multi-ancestry genome-wide association study of 21,000 cases and 95,000 controls identifies new risk loci for atopic dermatitis. |
Disease/Trait | Atopic dermatitis |
Initial sample | 18,900 European ancestry cases, 1,472 Japanese ancestry cases, 422 African American cases, 300 Latino cases, 305 cases, 84,166 European ancestry controls, 7,966 Japanese ancestry controls, 844 African American controls, 1,592 Latino controls, 896 controls |
Replication sample | 30,588 European ancestry cases, 459 African American cases, 1,012 Chinese ancestry cases, 226,537 European ancestry controls, 729 African American controls, 1,362 Chinese ancestry controls |
Region | 1q21.2 |
Chromosome id | chr1 |
Chromosome position | 150293284 |
Reported gene | C1orf51, MRPS21 |
Mapped gene | CIART - LOC105371434 |
Upstream gene id | 148523 |
Downstream gene id | 105371434 |
SNP gene ids | |
Upstream gene distance | 6191 |
Downstream gene distance | 18 |
SNP risk allele | rs7512552-T |
SNPs | rs7512552 |
Merged | 0 |
SNP id current | 7512552 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.49 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | (random effects) |
Or beta | |
%95 Ci | NR |
Platform | Illumina [15539996] (imputed) |
CNV | N |
Mapped trait | atopic eczema |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000274 |
Study accession | GCST003184 |