Human SNP ID | rs748404 |
---|---|
Human chromosome | chr15 |
Human SNP position | 43267033 |
Pig chromosome | chr1 |
Pig SNP position | 143048269 |
PubMed ID | 19654303 |
---|---|
Journal | Cancer Res |
Link | www.ncbi.nlm.nih.gov/pubmed/19654303 |
Study | Deciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study. |
Disease/Trait | Lung cancer |
Initial sample | 1,952 European ancestry cases, 1,438 European ancestry controls |
Replication sample | 2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals |
Region | 15q15.2 |
Chromosome id | chr15 |
Chromosome position | 43267033 |
Reported gene | TGM5 |
Mapped gene | TGM5 - ATP5HP1 |
Upstream gene id | 9333 |
Downstream gene id | 390581 |
SNP gene ids | |
Upstream gene distance | 10 |
Downstream gene distance | 798 |
SNP risk allele | rs748404-? |
SNPs | rs748404 |
Merged | 0 |
SNP id current | 748404 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 1.15 |
%95 Ci | [1.09-1.20] |
Platform | Illumina [511919] |
CNV | N |
Mapped trait | lung carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001071 |
Study accession | GCST000459 |