SNP Detail For rs748404
1.Mapping Information
Human SNP ID rs748404
Human chromosome chr15
Human SNP position 43267033
Pig chromosome chr1
Pig SNP position 143048269
2.Annotation Information
PubMed ID19654303
JournalCancer Res
Linkwww.ncbi.nlm.nih.gov/pubmed/19654303
StudyDeciphering the impact of common genetic variation on lung cancer risk: a genome-wide association study.
Disease/TraitLung cancer
Initial sample1,952 European ancestry cases, 1,438 European ancestry controls
Replication sample2,465 European ancestry cases, 3,005 European ancestry controls, 3,143 individuals, 3,762 individuals
Region15q15.2
Chromosome idchr15
Chromosome position43267033
Reported geneTGM5
Mapped geneTGM5 - ATP5HP1
Upstream gene id9333
Downstream gene id390581
SNP gene ids
Upstream gene distance10
Downstream gene distance798
SNP risk allelers748404-?
SNPsrs748404
Merged0
SNP id current748404
Contextupstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text
Or beta1.15
%95 Ci[1.09-1.20]
PlatformIllumina [511919]
CNVN
Mapped traitlung carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001071
Study accessionGCST000459