SNP Detail For rs7476422
1.Mapping Information
Human SNP ID rs7476422
Human chromosome chr10
Human SNP position 54444531
Pig chromosome chr14
Pig SNP position 104352531
2.Annotation Information
PubMed ID24025145
JournalBreast Cancer Res
Linkwww.ncbi.nlm.nih.gov/pubmed/24025145
StudyA genome-wide association study of chemotherapy-induced alopecia in breast cancer patients.
Disease/TraitAdverse response to chemotherapy in breast cancer (alopecia)
Initial sample303 Japanese ancestry cases, 880 Japanese ancestry controls
Replication sample23 Japanese ancestry cases
Region10q21.1
Chromosome idchr10
Chromosome position54444531
Reported genePCDH15
Mapped genePCDH15
Upstream gene id
Downstream gene id
SNP gene ids65217
Upstream gene distance
Downstream gene distance
SNP risk allelers7476422-G
SNPsrs7476422
Merged0
SNP id current7476422
Contextintron_variant
Intergenic0
Allele frequency0.82
P value0.0000003
Pvalue mlog6.52287874528033
P value text(Allelic)
Or beta2.06
%95 Ci[1.54-2.75]
PlatformIllumina [555600]
CNVN
Mapped traitchemotherapy-induced alopecia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005400
Study accessionGCST002181