SNP Detail For rs746080
1.Mapping Information
Human SNP ID rs746080
Human chromosome chr16
Human SNP position 84240799
Pig chromosome chr6
Pig SNP position 4835702
2.Annotation Information
PubMed ID22589738
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22589738
StudyGenome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
Disease/TraitVisceral adipose tissue adjusted for BMI
Initial sample5,560 European ancestry female individuals, 4,997 European ancestry male individuals
Replication sampleNA
Region16q24.1
Chromosome idchr16
Chromosome position84240799
Reported geneADAD2, TAF1C, KCNG4, WFDC1
Mapped geneKCNG4 - LOC105376777
Upstream gene id93107
Downstream gene id105376777
SNP gene ids
Upstream gene distance1049
Downstream gene distance50645
SNP risk allelers746080-T
SNPsrs746080
Merged0
SNP id current746080
Contextupstream_gene_variant
Intergenic1
Allele frequency0.31
P value0.000006
Pvalue mlog5.22184874961635
P value text(overall)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traitvisceral adipose tissue measurement, body mass index
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004765, http://www.ebi.ac.uk/efo/EFO_0004340
Study accessionGCST001523