Human SNP ID | rs746080 |
---|---|
Human chromosome | chr16 |
Human SNP position | 84240799 |
Pig chromosome | chr6 |
Pig SNP position | 4835702 |
PubMed ID | 22589738 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22589738 |
Study | Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. |
Disease/Trait | Visceral adipose tissue adjusted for BMI |
Initial sample | 5,560 European ancestry female individuals, 4,997 European ancestry male individuals |
Replication sample | NA |
Region | 16q24.1 |
Chromosome id | chr16 |
Chromosome position | 84240799 |
Reported gene | ADAD2, TAF1C, KCNG4, WFDC1 |
Mapped gene | KCNG4 - LOC105376777 |
Upstream gene id | 93107 |
Downstream gene id | 105376777 |
SNP gene ids | |
Upstream gene distance | 1049 |
Downstream gene distance | 50645 |
SNP risk allele | rs746080-T |
SNPs | rs746080 |
Merged | 0 |
SNP id current | 746080 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.31 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | (overall) |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [2500000] (imputed) |
CNV | N |
Mapped trait | visceral adipose tissue measurement, body mass index |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004765, http://www.ebi.ac.uk/efo/EFO_0004340 |
Study accession | GCST001523 |