SNP Detail For rs74557801
1.Mapping Information
Human SNP ID rs74557801
Human chromosome chr1
Human SNP position 117978648
Pig chromosome chr4
Pig SNP position 112753175
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1 in COPD
Initial sample5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases
Replication sampleNA
Region1p12
Chromosome idchr1
Chromosome position117978648
Reported geneSPAG17
Mapped geneSPAG17
Upstream gene id
Downstream gene id
SNP gene ids200162
Upstream gene distance
Downstream gene distance
SNP risk allelers74557801-G
SNPsrs74557801
Merged0
SNP id current74557801
Contextintron_variant
Intergenic0
Allele frequency0.997
P value0.000005
Pvalue mlog5.30102999566398
P value text(AA)
Or beta1.59
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitforced expiratory volume, response to bronchodilator, chronic obstructive pulmonary disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341
Study accessionGCST003263