Human SNP ID | rs7447927 |
---|---|
Human chromosome | chr5 |
Human SNP position | 139481561 |
Pig chromosome | chr2 |
Pig SNP position | 147175485 |
PubMed ID | 25129146 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25129146 |
Study | Joint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations. |
Disease/Trait | Esophageal squamous cell carcinoma |
Initial sample | 5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls |
Replication sample | 9,654 Han Chinese ancestry cases, 10,058 Han Chinese ancestry controls |
Region | 5q31.2 |
Chromosome id | chr5 |
Chromosome position | 139481561 |
Reported gene | TMEM173 |
Mapped gene | TMEM173 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 340061 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7447927-C |
SNPs | rs7447927 |
Merged | 0 |
SNP id current | 7447927 |
Context | synonymous_variant |
Intergenic | 0 |
Allele frequency | 0.54 |
P value | 8E-20 |
Pvalue mlog | 19.096910013008 |
P value text | |
Or beta | 1.18 |
%95 Ci | [1.14-1.22] |
Platform | Affymetrix, Illumina [7556215] (imputed) |
CNV | N |
Mapped trait | esophageal squamous cell carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005922 |
Study accession | GCST002568 |