SNP Detail For rs7447927
1.Mapping Information
Human SNP ID rs7447927
Human chromosome chr5
Human SNP position 139481561
Pig chromosome chr2
Pig SNP position 147175485
2.Annotation Information
PubMed ID25129146
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25129146
StudyJoint analysis of three genome-wide association studies of esophageal squamous cell carcinoma in Chinese populations.
Disease/TraitEsophageal squamous cell carcinoma
Initial sample5,337 Han Chinese ancestry cases, 5,787 Han Chinese ancestry controls
Replication sample9,654 Han Chinese ancestry cases, 10,058 Han Chinese ancestry controls
Region5q31.2
Chromosome idchr5
Chromosome position139481561
Reported geneTMEM173
Mapped geneTMEM173
Upstream gene id
Downstream gene id
SNP gene ids340061
Upstream gene distance
Downstream gene distance
SNP risk allelers7447927-C
SNPsrs7447927
Merged0
SNP id current7447927
Contextsynonymous_variant
Intergenic0
Allele frequency0.54
P value8E-20
Pvalue mlog19.096910013008
P value text
Or beta1.18
%95 Ci[1.14-1.22]
PlatformAffymetrix, Illumina [7556215] (imputed)
CNVN
Mapped traitesophageal squamous cell carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005922
Study accessionGCST002568