SNP Detail For rs7435
1.Mapping Information
Human SNP ID rs7435
Human chromosome chr21
Human SNP position 43984457
Pig chromosome chr9
Pig SNP position 139599813
2.Annotation Information
PubMed ID21829377
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21829377
StudyGenetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitPhospholipid levels (plasma)
Initial sample8,866 European ancestry individuals
Replication sampleNA
Region21q22.3
Chromosome idchr21
Chromosome position43984457
Reported geneAGPAT3
Mapped geneAGPAT3
Upstream gene id
Downstream gene id
SNP gene ids56894
Upstream gene distance
Downstream gene distance
SNP risk allelers7435-A
SNPsrs7435
Merged0
SNP id current7435
Context3_prime_UTR_variant
Intergenic0
Allele frequencyNR
P value0.0000002
Pvalue mlog6.69897000433601
P value text(DPA)
Or beta0.02
%95 Ci[NR] % decrease
PlatformAffymetrix, Illumina [NR]
CNVN
Mapped traitphospholipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004639
Study accessionGCST001179