SNP Detail For rs743446
1.Mapping Information
Human SNP ID rs743446
Human chromosome chr21
Human SNP position 38684499
Pig chromosome chr13
Pig SNP position 212456661
2.Annotation Information
PubMed ID20662065
JournalArthritis Rheum
Linkwww.ncbi.nlm.nih.gov/pubmed/20662065
StudyIdentification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus.
Disease/TraitNeonatal lupus
Initial sample116 European ancestry cases, 3,351 European ancestry controls
Replication sampleNA
Region21q22.2
Chromosome idchr21
Chromosome position38684499
Reported geneNCRNA00114, ERG
Mapped geneERG - LINC00114
Upstream gene id2078
Downstream gene id400866
SNP gene ids
Upstream gene distance22666
Downstream gene distance54456
SNP risk allelers743446-?
SNPsrs743446
Merged0
SNP id current743446
Contextintergenic_variant
Intergenic1
Allele frequency0.49
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta2.4
%95 Ci[1.64-3.49]
PlatformIllumina [346110]
CNVN
Mapped traitneonatal systemic lupus erthematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004537
Study accessionGCST000738