Human SNP ID | rs743446 |
---|---|
Human chromosome | chr21 |
Human SNP position | 38684499 |
Pig chromosome | chr13 |
Pig SNP position | 212456661 |
PubMed ID | 20662065 |
---|---|
Journal | Arthritis Rheum |
Link | www.ncbi.nlm.nih.gov/pubmed/20662065 |
Study | Identification of candidate loci at 6p21 and 21q22 in a genome-wide association study of cardiac manifestations of neonatal lupus. |
Disease/Trait | Neonatal lupus |
Initial sample | 116 European ancestry cases, 3,351 European ancestry controls |
Replication sample | NA |
Region | 21q22.2 |
Chromosome id | chr21 |
Chromosome position | 38684499 |
Reported gene | NCRNA00114, ERG |
Mapped gene | ERG - LINC00114 |
Upstream gene id | 2078 |
Downstream gene id | 400866 |
SNP gene ids | |
Upstream gene distance | 22666 |
Downstream gene distance | 54456 |
SNP risk allele | rs743446-? |
SNPs | rs743446 |
Merged | 0 |
SNP id current | 743446 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.49 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 2.4 |
%95 Ci | [1.64-3.49] |
Platform | Illumina [346110] |
CNV | N |
Mapped trait | neonatal systemic lupus erthematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004537 |
Study accession | GCST000738 |