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SNP Detail For rs742731
1.Mapping Information
| Human SNP ID | rs742731 |
|---|---|
| Human chromosome | chr20 |
| Human SNP position | 18905094 |
| Pig chromosome | chr17 |
| Pig SNP position | 30598803 |
2.Annotation Information
| PubMed ID | 24204828 |
|---|---|
| Journal | PLoS One |
| Link | www.ncbi.nlm.nih.gov/pubmed/24204828 |
| Study | Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits. |
| Disease/Trait | Homeostasis model assessment of insulin resistance (interaction) |
| Initial sample | 820 European ancestry individuals |
| Replication sample | NA |
| Region | 20p11.23 |
| Chromosome id | chr20 |
| Chromosome position | 18905094 |
| Reported gene | C20orf79, LOC100130062 |
| Mapped gene | C20orf78 - LOC105377058 |
| Upstream gene id | 100128496 |
| Downstream gene id | 105377058 |
| SNP gene ids | |
| Upstream gene distance | 74891 |
| Downstream gene distance | 40645 |
| SNP risk allele | rs742731-A |
| SNPs | rs742731 |
| Merged | 0 |
| SNP id current | 742731 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.407 |
| P value | 0.000005 |
| Pvalue mlog | 5.30102999566398 |
| P value text | (Carbohydrate) |
| Or beta | |
| %95 Ci | |
| Platform | Affymetrix [590000] |
| CNV | N |
| Mapped trait | HOMA-IR |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004501 |
| Study accession | GCST002253 |
| PubMed ID | 24204828 |
| Journal | PLoS One |
| Link | www.ncbi.nlm.nih.gov/pubmed/24204828 |
| Study | Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits. |
| Disease/Trait | Fasting insulin (interaction) |
| Initial sample | 820 European ancestry individuals |
| Replication sample | NA |
| Region | 20p11.23 |
| Chromosome id | chr20 |
| Chromosome position | 18905094 |
| Reported gene | C20orf79, LOC100130062 |
| Mapped gene | C20orf78 - LOC105377058 |
| Upstream gene id | 100128496 |
| Downstream gene id | 105377058 |
| SNP gene ids | |
| Upstream gene distance | 74891 |
| Downstream gene distance | 40645 |
| SNP risk allele | rs742731-A |
| SNPs | rs742731 |
| Merged | 0 |
| SNP id current | 742731 |
| Context | intergenic_variant |
| Intergenic | 1 |
| Allele frequency | 0.407 |
| P value | 0.000002 |
| Pvalue mlog | 5.69897000433601 |
| P value text | (Carbohydrate) |
| Or beta | |
| %95 Ci | |
| Platform | Affymetrix [590000] |
| CNV | N |
| Mapped trait | fasting blood insulin measurement |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004466 |
| Study accession | GCST002248 |
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and Xi'an University of Technology ©2014-2017 All Rights Reserved.
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