Human SNP ID | rs7414227 |
---|---|
Human chromosome | chr1 |
Human SNP position | 153876520 |
Pig chromosome | chr4 |
Pig SNP position | 104703996 |
PubMed ID | 22903471 |
---|---|
Journal | Brain Imaging Behav |
Link | www.ncbi.nlm.nih.gov/pubmed/22903471 |
Study | Genome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects. |
Disease/Trait | Lentiform nucleus volume |
Initial sample | 162 European ancestry Alzheimer__s disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families |
Replication sample | NA |
Region | 1q21.3 |
Chromosome id | chr1 |
Chromosome position | 153876520 |
Reported gene | GATAD2B |
Mapped gene | GATAD2B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57459 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7414227-G |
SNPs | rs7414227 |
Merged | 0 |
SNP id current | 7414227 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.49 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 99.5 |
%95 Ci | [NR] unit decrease |
Platform | Illumina [2380200] (imputed) |
CNV | N |
Mapped trait | lentiform nucleus measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004913 |
Study accession | GCST001640 |