SNP Detail For rs7414227
1.Mapping Information
Human SNP ID rs7414227
Human chromosome chr1
Human SNP position 153876520
Pig chromosome chr4
Pig SNP position 104703996
2.Annotation Information
PubMed ID22903471
JournalBrain Imaging Behav
Linkwww.ncbi.nlm.nih.gov/pubmed/22903471
StudyGenome-wide association identifies genetic variants associated with lentiform nucleus volume in N = 1345 young and elderly subjects.
Disease/TraitLentiform nucleus volume
Initial sample162 European ancestry Alzheimer__s disease cases, 346 European ancestry mild cognitive impairment cases, 198 European ancestry controls, 639 European ancestry individuals from 364 families
Replication sampleNA
Region1q21.3
Chromosome idchr1
Chromosome position153876520
Reported geneGATAD2B
Mapped geneGATAD2B
Upstream gene id
Downstream gene id
SNP gene ids57459
Upstream gene distance
Downstream gene distance
SNP risk allelers7414227-G
SNPsrs7414227
Merged0
SNP id current7414227
Contextintron_variant
Intergenic0
Allele frequency0.49
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta99.5
%95 Ci[NR] unit decrease
PlatformIllumina [2380200] (imputed)
CNVN
Mapped traitlentiform nucleus measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004913
Study accessionGCST001640