Human SNP ID | rs74019828 |
---|---|
Human chromosome | chr16 |
Human SNP position | 58175370 |
Pig chromosome | chr6 |
Pig SNP position | 18050141 |
PubMed ID | 24795349 |
---|---|
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24795349 |
Study | Genome-wide association study identifies variants in casein kinase II (CSNK2A2) to be associated with leukocyte telomere length in a Punjabi Sikh diabetic cohort. |
Disease/Trait | Telomere length |
Initial sample | 842 Punjabi Sikh ancestry type 2 diabetes cases, 774 Punjabi Sikh ancestry controls |
Replication sample | 1,108 Punjabi Sikh ancestry type 2 diabetes cases, 1,289 Punjabi Sikh ancestry controls, 2,952 European ancestry myocardial infarction cases and healthy controls, 10,033 European ancestry individuals |
Region | 16q21 |
Chromosome id | chr16 |
Chromosome position | 58175370 |
Reported gene | CSNK2A2 |
Mapped gene | CSNK2A2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1459 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs74019828-A |
SNPs | rs74019828 |
Merged | 0 |
SNP id current | 74019828 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.16 |
P value | 0.00000005 |
Pvalue mlog | 7.30102999566398 |
P value text | (Punjabi Sikhs) |
Or beta | 0.38 |
%95 Ci | [0.26-0.50] unit decrease |
Platform | Illumina [5904251] (imputed) |
CNV | N |
Mapped trait | telomere length |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004505 |
Study accession | GCST002437 |