SNP Detail For rs74019828
1.Mapping Information
Human SNP ID rs74019828
Human chromosome chr16
Human SNP position 58175370
Pig chromosome chr6
Pig SNP position 18050141
2.Annotation Information
PubMed ID24795349
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24795349
StudyGenome-wide association study identifies variants in casein kinase II (CSNK2A2) to be associated with leukocyte telomere length in a Punjabi Sikh diabetic cohort.
Disease/TraitTelomere length
Initial sample842 Punjabi Sikh ancestry type 2 diabetes cases, 774 Punjabi Sikh ancestry controls
Replication sample1,108 Punjabi Sikh ancestry type 2 diabetes cases, 1,289 Punjabi Sikh ancestry controls, 2,952 European ancestry myocardial infarction cases and healthy controls, 10,033 European ancestry individuals
Region16q21
Chromosome idchr16
Chromosome position58175370
Reported geneCSNK2A2
Mapped geneCSNK2A2
Upstream gene id
Downstream gene id
SNP gene ids1459
Upstream gene distance
Downstream gene distance
SNP risk allelers74019828-A
SNPsrs74019828
Merged0
SNP id current74019828
Contextintron_variant
Intergenic0
Allele frequency0.16
P value0.00000005
Pvalue mlog7.30102999566398
P value text(Punjabi Sikhs)
Or beta0.38
%95 Ci[0.26-0.50] unit decrease
PlatformIllumina [5904251] (imputed)
CNVN
Mapped traittelomere length
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004505
Study accessionGCST002437