SNP Detail For rs740083
1.Mapping Information
Human SNP ID rs740083
Human chromosome chr7
Human SNP position 49429407
Pig chromosome chr9
Pig SNP position 149281339
2.Annotation Information
PubMed ID25436638
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/25436638
StudyGenetic Variants Associated with Serum Thyroid Stimulating Hormone (TSH) Levels in European Americans and African Americans from the eMERGE Network.
Disease/TraitSerum thyroid-stimulating hormone levels
Initial sample4,501 European ancestry individuals, 351 African American individuals
Replication sampleNA
Region7p12.2
Chromosome idchr7
Chromosome position49429407
Reported geneVWC2
Mapped geneCDC14C - VWC2
Upstream gene id168448
Downstream gene id375567
SNP gene ids
Upstream gene distance501954
Downstream gene distance344254
SNP risk allelers740083-A
SNPsrs740083
Merged0
SNP id current740083
Contextintergenic_variant
Intergenic1
Allele frequency0.24
P value0.000005
Pvalue mlog5.30102999566398
P value text(EA)
Or beta0.05
%95 Ci[0.03-0.07] unit decrease
PlatformIllumina [up to 905285]
CNVN
Mapped traitthyroid stimulating hormone measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004748
Study accessionGCST002707