SNP Detail For rs73962318
1.Mapping Information
Human SNP ID rs73962318
Human chromosome chr2
Human SNP position 143097365
Pig chromosome chrM
Pig SNP position 12118
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region2q22.2
Chromosome idchr2
Chromosome position143097365
Reported geneNR
Mapped geneARHGAP15
Upstream gene id
Downstream gene id
SNP gene ids55843
Upstream gene distance
Downstream gene distance
SNP risk allelers73962318-?
SNPsrs73962318
Merged
SNP id current73962318
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequencyNR
P value0.0000006
Pvalue mlog6.22184874961635
P value text
Or beta0.3471
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957