SNP Detail For rs7395662
1.Mapping Information
Human SNP ID rs7395662
Human chromosome chr11
Human SNP position 48497341
Pig chromosome chr10
Pig SNP position 78476521
2.Annotation Information
PubMed ID19060911
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19060911
StudyLoci influencing lipid levels and coronary heart disease risk in 16 European population cohorts.
Disease/TraitHDL cholesterol
Initial sample20,697 European ancestry individuals, 715 Orcadian individuals
Replication sampleNA
Region11p11.2
Chromosome idchr11
Chromosome position48497341
Reported geneFOLH1, MADD
Mapped geneOR4A47 - OR4A45P
Upstream gene id403253
Downstream gene id403251
SNP gene ids
Upstream gene distance7567
Downstream gene distance82042
SNP risk allelers7395662-G
SNPsrs7395662
Merged0
SNP id current7395662
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.61
P value0.00000000006
Pvalue mlog10.2218487496163
P value text
Or beta0.07
%95 Ci[NR] s.d. decrease
PlatformAffymetrix, Illumina [up to 600000]
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST000288