Human SNP ID | rs7395662 |
---|---|
Human chromosome | chr11 |
Human SNP position | 48497341 |
Pig chromosome | chr10 |
Pig SNP position | 78476521 |
PubMed ID | 19060911 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19060911 |
Study | Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts. |
Disease/Trait | HDL cholesterol |
Initial sample | 20,697 European ancestry individuals, 715 Orcadian individuals |
Replication sample | NA |
Region | 11p11.2 |
Chromosome id | chr11 |
Chromosome position | 48497341 |
Reported gene | FOLH1, MADD |
Mapped gene | OR4A47 - OR4A45P |
Upstream gene id | 403253 |
Downstream gene id | 403251 |
SNP gene ids | |
Upstream gene distance | 7567 |
Downstream gene distance | 82042 |
SNP risk allele | rs7395662-G |
SNPs | rs7395662 |
Merged | 0 |
SNP id current | 7395662 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.61 |
P value | 0.00000000006 |
Pvalue mlog | 10.2218487496163 |
P value text | |
Or beta | 0.07 |
%95 Ci | [NR] s.d. decrease |
Platform | Affymetrix, Illumina [up to 600000] |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST000288 |