SNP Detail For rs73838071
1.Mapping Information
Human SNP ID rs73838071
Human chromosome chr4
Human SNP position 105275820
Pig chromosome chr8
Pig SNP position 125012093
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region4q24
Chromosome idchr4
Chromosome position105275820
Reported geneTET2
Mapped geneTET2-AS1, TET2
Upstream gene id
Downstream gene id
SNP gene ids104384744, 54790
Upstream gene distance
Downstream gene distance
SNP risk allelers73838071-A
SNPsrs73838071
Merged0
SNP id current73838071
Contextsynonymous_variant
Intergenic0
Allele frequency0.997
P value0.000003
Pvalue mlog5.52287874528033
P value text(AA)
Or beta0.154
%95 Ciunit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264