Human SNP ID | rs73838071 |
---|---|
Human chromosome | chr4 |
Human SNP position | 105275820 |
Pig chromosome | chr8 |
Pig SNP position | 125012093 |
PubMed ID | 26634245 |
---|---|
Journal | BMC Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26634245 |
Study | A genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry. |
Disease/Trait | Post bronchodilator FEV1/FVC ratio |
Initial sample | 10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals |
Replication sample | NA |
Region | 4q24 |
Chromosome id | chr4 |
Chromosome position | 105275820 |
Reported gene | TET2 |
Mapped gene | TET2-AS1, TET2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 104384744, 54790 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs73838071-A |
SNPs | rs73838071 |
Merged | 0 |
SNP id current | 73838071 |
Context | synonymous_variant |
Intergenic | 0 |
Allele frequency | 0.997 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (AA) |
Or beta | 0.154 |
%95 Ci | unit increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | response to bronchodilator, FEV/FEC ratio |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST003264 |