SNP Detail For rs738144
1.Mapping Information
Human SNP ID rs738144
Human chromosome chr22
Human SNP position 38782370
Pig chromosome chr5
Pig SNP position 6490657
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region22q13.1
Chromosome idchr22
Chromosome position38782370
Reported geneNR
Mapped geneDNAL4
Upstream gene id
Downstream gene id
SNP gene ids10126
Upstream gene distance
Downstream gene distance
SNP risk allelers738144-G
SNPsrs738144
Merged0
SNP id current738144
Contextintron_variant
Intergenic0
Allele frequency0.204838376727597
P value0.000007
Pvalue mlog5.15490195998574
P value text(IGP75)
Or beta0.1878
%95 Ci[0.11-0.27] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848