SNP Detail For rs7379133
1.Mapping Information
Human SNP ID rs7379133
Human chromosome chr5
Human SNP position 2149096
Pig chromosome chr16
Pig SNP position 85327041
2.Annotation Information
PubMed ID25644384
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25644384
StudyGenetic contributions to variation in general cognitive function: a meta-analysis of genome-wide association studies in the CHARGE consortium (N=53鈥?49).
Disease/TraitCognitive function
Initial sample51,719 European ancestry individuals 1,473 Erasmus Rupchen Family individuals, 327 Korculan individuals, 430 Orcadian individuals
Replication sampleNA
Region5p15.33
Chromosome idchr5
Chromosome position2149096
Reported geneintergenic
Mapped geneLOC105374618 - LOC100506858
Upstream gene id105374618
Downstream gene id100506858
SNP gene ids
Upstream gene distance29710
Downstream gene distance154624
SNP risk allelers7379133-?
SNPsrs7379133
Merged0
SNP id current7379133
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta0.1113
%95 Ci[0.062-0.160] unit increase
PlatformAffymetrix, Illumina [2478500] (imputed)
CNVN
Mapped traitcognition
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003925
Study accessionGCST002774