SNP Detail For rs736825
1.Mapping Information
Human SNP ID rs736825
Human chromosome chr12
Human SNP position 54023792
Pig chromosome chr5
Pig SNP position 19700966
2.Annotation Information
PubMed ID22504420
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22504420
StudyGenome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.
Disease/TraitBone mineral density
Initial sampleUp to 32,961 European and East Asian ancestry individuals
Replication sampleUp to 50,933 European and East Asian ancestry individuals
Region12q13.13
Chromosome idchr12
Chromosome position54023792
Reported geneHOXC6
Mapped geneHOXC5, HOXC4, HOXC6
Upstream gene id
Downstream gene id
SNP gene ids3222, 3221, 3223
Upstream gene distance
Downstream gene distance
SNP risk allelers736825-C
SNPsrs736825
Merged0
SNP id current736825
Contextintron_variant
Intergenic0
Allele frequency0.56
P value0.0000000000000008
Pvalue mlog15.096910013008
P value text(LSBMD)
Or beta0.05
%95 Ci[NR] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST001482