Human SNP ID | rs736825 |
---|---|
Human chromosome | chr12 |
Human SNP position | 54023792 |
Pig chromosome | chr5 |
Pig SNP position | 19700966 |
PubMed ID | 22504420 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22504420 |
Study | Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture. |
Disease/Trait | Bone mineral density |
Initial sample | Up to 32,961 European and East Asian ancestry individuals |
Replication sample | Up to 50,933 European and East Asian ancestry individuals |
Region | 12q13.13 |
Chromosome id | chr12 |
Chromosome position | 54023792 |
Reported gene | HOXC6 |
Mapped gene | HOXC5, HOXC4, HOXC6 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3222, 3221, 3223 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs736825-C |
SNPs | rs736825 |
Merged | 0 |
SNP id current | 736825 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.56 |
P value | 0.0000000000000008 |
Pvalue mlog | 15.096910013008 |
P value text | (LSBMD) |
Or beta | 0.05 |
%95 Ci | [NR] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | bone density |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003923 |
Study accession | GCST001482 |