SNP Detail For rs736408
1.Mapping Information
Human SNP ID rs736408
Human chromosome chr3
Human SNP position 52801338
Pig chromosome chr13
Pig SNP position 38113001
2.Annotation Information
PubMed ID21926972
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21926972
StudyLarge-scale genome-wide association analysis of bipolar disorder identifies a new susceptibility locus near ODZ4.
Disease/TraitBipolar disorder
Initial sample7,481 European ancestry cases, 9,250 European ancestry controls
Replication sample4,496 European ancestry cases, 42,422 European ancestry controls
Region3p21.1
Chromosome idchr3
Chromosome position52801338
Reported genePHF7, NT5DC2, MUSTN1, LOC440957, GNL3, GLYCTK, GLT8D1, DNAH1, BAP1, ALAS1, ITIH3, ITIH4, PRKCD, ITIH1, NEK4, PBRM1, WDR82, TWF2, TNNC1, TMEM110, TLR9, SPCS1, SNORD69, NISCH, STAB1, SNORD19, SNORD19B, SFMBT1, SEMA3G, RFT1, PPM1M
Mapped geneITIH3
Upstream gene id
Downstream gene id
SNP gene ids3699
Upstream gene distance
Downstream gene distance
SNP risk allelers736408-C
SNPsrs736408
Merged0
SNP id current736408
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.1
%95 Ci[NR]
PlatformAffymetrix, Illumina [2415422] (imputed)
CNVN
Mapped traitbipolar disorder
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000289
Study accessionGCST001241