SNP Detail For rs736289
1.Mapping Information
Human SNP ID rs736289
Human chromosome chr19
Human SNP position 33266156
Pig chromosome chr6
Pig SNP position 38628133
2.Annotation Information
PubMed ID21102463
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21102463
StudyGenome-wide meta-analysis increases to 71 the number of confirmed Crohn__s disease susceptibility loci.
Disease/TraitCrohn__s disease
Initial sample6,333 European ancestry cases, 15,056 European ancestry controls
Replication sample15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios
Region19q13.11
Chromosome idchr19
Chromosome position33266156
Reported geneintergenic
Mapped geneSLC7A10 - CEBPA
Upstream gene id56301
Downstream gene id1050
SNP gene ids
Upstream gene distance40306
Downstream gene distance33778
SNP risk allelers736289-T
SNPsrs736289
Merged0
SNP id current736289
Contextintergenic_variant
Intergenic1
Allele frequency0.612
P value0.000000009
Pvalue mlog8.04575749056067
P value text
Or beta1.06
%95 Ci[1.02-1.11]
PlatformAffymetrix, Illumina [953241] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST000879