SNP Detail For rs7359257
1.Mapping Information
Human SNP ID rs7359257
Human chromosome chr15
Human SNP position 67410569
Pig chromosome chr1
Pig SNP position 183247780
2.Annotation Information
PubMed ID21102462
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21102462
StudyThirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.
Disease/TraitMenarche (age at onset)
Initial sample86,142 European ancestry female individuals, 557 Old Order Amish female individuals, 1,103 Erasmus Rucphen female individuals
Replication sampleUp to 12,813 European ancestry female individuals, 910 Val Borbera female individuals, 348 Orcadian female individuals, 338 Friuli Venezia Giulia female individuals, 322 Carlantino female individuals
Region15q23
Chromosome idchr15
Chromosome position67410569
Reported geneIQCH
Mapped geneIQCH, IQCH-AS1
Upstream gene id
Downstream gene id
SNP gene ids64799, 100506686
Upstream gene distance
Downstream gene distance
SNP risk allelers7359257-A
SNPsrs7359257
Merged0
SNP id current7359257
Contextintron_variant
Intergenic0
Allele frequency0.45
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.7
%95 Ci[0.92-2.48] week increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitage at menarche
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004703
Study accessionGCST000880