SNP Detail For rs735854
1.Mapping Information
Human SNP ID rs735854
Human chromosome chr22
Human SNP position 36283012
Pig chromosome chr5
Pig SNP position 9078027
2.Annotation Information
PubMed ID20395239
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20395239
StudyGenome-wide association identifies ATOH7 as a major gene determining human optic disc size.
Disease/TraitOptic nerve measurement (rim area)
Initial sample1,368 European ancestry twins from 666 families
Replication sample848 European ancestry twins from 531 families
Region22q12.3
Chromosome idchr22
Chromosome position36283012
Reported geneMYH9
Mapped geneMYH9
Upstream gene id
Downstream gene id
SNP gene ids4627
Upstream gene distance
Downstream gene distance
SNP risk allelers735854-C
SNPsrs735854
Merged0
SNP id current735854
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta0.156
%95 Ci[0.072-0.240] unit decrease
PlatformIllumina [~ 2740000] (imputed)
CNVN
Mapped traitoptic disc size measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004832
Study accessionGCST000658