Human SNP ID | rs7350481 |
---|---|
Human chromosome | chr11 |
Human SNP position | 116715567 |
Pig chromosome | chr9 |
Pig SNP position | 49175934 |
PubMed ID | 20139978 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20139978 |
Study | Genome-wide association study of hematological and biochemical traits in a Japanese population. |
Disease/Trait | Hematological and biochemical traits |
Initial sample | Up to 14,402 Japanese individuals |
Replication sample | NA |
Region | 11q23.3 |
Chromosome id | chr11 |
Chromosome position | 116715567 |
Reported gene | APOA1, APOC3, APOA4, APOA5 |
Mapped gene | LOC101929011 - BUD13 |
Upstream gene id | 101929011 |
Downstream gene id | 84811 |
SNP gene ids | |
Upstream gene distance | 57315 |
Downstream gene distance | 32603 |
SNP risk allele | rs7350481-T |
SNPs | rs7350481 |
Merged | 0 |
SNP id current | 7350481 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.28 |
P value | 0.0000000009 |
Pvalue mlog | 9.04575749056067 |
P value text | (HDL) |
Or beta | 0.124 |
%95 Ci | [0.085-0.163] unit decrease |
Platform | Illumina [561583] |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST000583 |
PubMed ID | 20139978 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20139978 |
Study | Genome-wide association study of hematological and biochemical traits in a Japanese population. |
Disease/Trait | Triglycerides |
Initial sample | 8,993 Japanese ancestry individuals |
Replication sample | NA |
Region | 11q23.3 |
Chromosome id | chr11 |
Chromosome position | 116715567 |
Reported gene | APOA1, APOC3, APOA4, APOA5 |
Mapped gene | LOC101929011 - BUD13 |
Upstream gene id | 101929011 |
Downstream gene id | 84811 |
SNP gene ids | |
Upstream gene distance | 57315 |
Downstream gene distance | 32603 |
SNP risk allele | rs7350481-G |
SNPs | rs7350481 |
Merged | 0 |
SNP id current | 7350481 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.43 |
P value | 1E-49 |
Pvalue mlog | 49 |
P value text | |
Or beta | 0.241 |
%95 Ci | [0.21-0.27] unit increase |
Platform | Illumina [561583] |
CNV | N |
Mapped trait | triglyceride measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004530 |
Study accession | GCST000584 |