SNP Detail For rs7350481
1.Mapping Information
Human SNP ID rs7350481
Human chromosome chr11
Human SNP position 116715567
Pig chromosome chr9
Pig SNP position 49175934
2.Annotation Information
PubMed ID20139978
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20139978
StudyGenome-wide association study of hematological and biochemical traits in a Japanese population.
Disease/TraitHematological and biochemical traits
Initial sampleUp to 14,402 Japanese individuals
Replication sampleNA
Region11q23.3
Chromosome idchr11
Chromosome position116715567
Reported geneAPOA1, APOC3, APOA4, APOA5
Mapped geneLOC101929011 - BUD13
Upstream gene id101929011
Downstream gene id84811
SNP gene ids
Upstream gene distance57315
Downstream gene distance32603
SNP risk allelers7350481-T
SNPsrs7350481
Merged0
SNP id current7350481
Contextregulatory_region_variant
Intergenic1
Allele frequency0.28
P value0.0000000009
Pvalue mlog9.04575749056067
P value text(HDL)
Or beta0.124
%95 Ci[0.085-0.163] unit decrease
PlatformIllumina [561583]
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST000583
PubMed ID20139978
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20139978
StudyGenome-wide association study of hematological and biochemical traits in a Japanese population.
Disease/TraitTriglycerides
Initial sample8,993 Japanese ancestry individuals
Replication sampleNA
Region11q23.3
Chromosome idchr11
Chromosome position116715567
Reported geneAPOA1, APOC3, APOA4, APOA5
Mapped geneLOC101929011 - BUD13
Upstream gene id101929011
Downstream gene id84811
SNP gene ids
Upstream gene distance57315
Downstream gene distance32603
SNP risk allelers7350481-G
SNPsrs7350481
Merged0
SNP id current7350481
Contextregulatory_region_variant
Intergenic1
Allele frequency0.43
P value1E-49
Pvalue mlog49
P value text
Or beta0.241
%95 Ci[0.21-0.27] unit increase
PlatformIllumina [561583]
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST000584